PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010110978.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 297aa    MW: 33619.3 Da    PI: 7.1086
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010110978.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05121140120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C+k+F+r  n++ H+
  XP_010110978.1 121 FSCSVCNKTFNRYNNMQMHM 140
                     89*****************9 PP

2zf-C2H213.90.00016206228123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk+F  + + ++H +++
  XP_010110978.1 206 FGCRKCGKPFAVRGDWRTHEKNC 228
                     56*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF128747.7E-5121140No hitNo description
SMARTSM003550.071121143IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.98E-7121143No hitNo description
Gene3DG3DSA:3.30.160.604.5E-6121140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.429121148IPR007087Zinc finger, C2H2
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
SMARTSM00355130169201IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.9E-5192226IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.98E-7201226No hitNo description
SMARTSM00355140206226IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MHTSTTTSSS MNYICTSTES ACPVAADNQE DEDSVFLSLG PRGNHNIFKQ HKAIFHHSSL  60
NQPQNDQSLR SRHEEGVTVA LHIGPPNAGS VVRPNHSGGP PIESQYWIPS PAQILVGPTQ  120
FSCSVCNKTF NRYNNMQMHM WGHGSQYRKG PESLRGTKPA SSMLRLPCYC CSEGCKNNID  180
HSRSRPLKDF RTLQTHYKRK HGAKPFGCRK CGKPFAVRGD WRTHEKNCGK LWFCICGSDF  240
KHKRSLKDHV RAFGDGHTPH TVEFCEIEEE DADEYDDDDR DGDEEEREND TFESVVF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010110978.10.0Protein TRANSPARENT TESTA 1
SwissprotQ9FX681e-117ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLW9SEQ30.0W9SEQ3_9R
STRINGVIT_01s0011g03100.t011e-138(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-117C2H2-like zinc finger protein